Database of protein-protein complexes. as of 2006-06-20 (P.J.Kundrotas and E.Alexov (2006) Nucleic Acids Res. , doi:10.1093/nar/gk1768).
Perform search within the whole database complexes only domains only with AND OR between the search criteria.
Search criteria:
pdb ID (or its fragment): at the beginning everywhere No more than 4 characters, please !
name of protein (or its fragment):
interface area is exactly (+-5%) larger than smaller than between Å2 and Å2 Please enter real positive number!
X-ray resolution is exactly (+-5%) larger than smaller than between Å and Å Please enter real positive number!
Number of residues on interfacee
for larger (A) part is exactly (+-5%) larger than smaller than between and Please enter integer positive number!
for smaller (B) part is exactly (+-5%) larger than smaller than between and Please enter integer positive number!
Total number of residues:
Presence of N (up to 5) specific residues on the interface (OR condition):
in larger (A) part 1 2 3 4 5 residue(s): ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL or ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL or ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL or ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL or ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL
Please choose different residues!
in smaller (B) part 1 2 3 4 5 residue(s): ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL or ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL or ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL or ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL or ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL
Presence of specific combination of N (up to 5) residues on the interface (AND condition):
in larger (A) part 1 2 3 4 5 residues: ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL and ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL and ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL and ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL and ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL
in smaller (B) part 1 2 3 4 5 residues: ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL and ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL and ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL and ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL and ALA ARG ASN ASP CYS GLN GLU GLY HIS ILE LEU LYS MET PHE PRO SER THR TRP TYR VAL
Sort result in ascending descending order by:
pdb ID pdb name interface area X-ray structure resolution
nr. of residues on interface for component A
nr. of residues on interface for component B
total nr. of residues for component A
total nr. of residues for component B
This database was created and is maintained by Petras Kundrotas